References

Arponen A (2012) Prioritizing species for conservation planning. Biodivers Conserv 21(4):875– 893. doi:10.1007/S10531-012-0242-1

Ball IR, Possingham HP, Watts M (2009) Chapter 14: Marxan and relatives: software for spatial conservation prioritisation. In: Moilanen A, Wilson KA, Possingham HP (eds) Spatial conservation prioritisation: quantitative methods and computational tools. Oxford University Press, Oxford, pp 185–195

Barnosky AD, Matzke N, Tomiya S et al (2011) Has the Earth's sixth mass extinction already arrived? Nature 471(7336):51–57. doi:10.1038/Nature09678

Barnosky AD, Hadly EA, Bascompte J et al (2012) Approaching a state shift in Earth's biosphere.

Nature 486(7401):52–58. doi:10.1038/Nature11018

Brooks TM, Cuttelod A, Faith DP, Garcia-Moreno J, Langhammer P, Perez-Espona S (2015) Why and how might genetic and phylogenetic diversity be reflected in the identification of key biodiversity areas? Philos Trans R Soc B 370(1662). doi: 10.1098/Rstb.2014.0019

Buerki S, Callmander MW, Bachman S et al (2015) Incorporating evolutionary history into conservation planning in biodiversity hotspots. Philos Trans R Soc B 370(1662). doi: 10.1098/ Rstb.2014.0014

Cadotte MW, Davies TJ (2010) Rarest of the rare: advances in combining evolutionary distinctiveness and scarcity to inform conservation at biogeographical scales. Divers Distrib 16(3):376– 385. doi:10.1111/J.1472-4642.2010.00650.X

Chao A, Chiu CH, Jost L (2010) Phylogenetic diversity measures based on Hill numbers. Philos Trans R Soc B 365(1558):3599–3609. doi:10.1098/Rstb.2010.0272

Davies TJ (2015) Losing history: how extinctions prune features from the tree of life. Philos Trans R Soc B 370(1662). doi:10.1098/Rstb.2014.0006

Davies TJ, Cadotte MW (2011) Quantifying biodiversity: does it matter what we measure? In: Zachos FE, Habel JC (eds) Biodiversity hotspots: distribution and protection of conservation priority areas. Springer, Berlin, pp 43–60

Davies TJ, Fritz SA, Grenyer R et al (2008) Phylogenetic trees and the future of mammalian biodiversity. Proc Natl Acad Sci U S A 105:11556–11563

Eldredge N, Cracraft J (1980) Phylogenetic patterns and the evolutionary process: method and theory in comparative biology. Columbia University Press, New York

Faith DP (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61(1):1–10 Faith DP (2015) Phylogenetic diversity, functional trait diversity and extinction: avoiding tipping

points and worst-case losses. Philos Trans R Soc B 370(1662). doi:10.1098/Rstb.2014.0011 Faith DP, Richards Z (2012) Climate change impacts on the tree of life: changes in phylogenetic

diversity illustrated for Acropora corals. Biology 1:906–932

Faith DP, Magallon S, Hendry AP et al (2010) Evosystem services: an evolutionary perspective on the links between biodiversity and human well-being. Curr Opin Environ Sustain 2(1–2):66– 74. doi:10.1016/J.Cosust.2010.04.002

Forest F, Grenyer R, Rouget M et al (2007) Preserving the evolutionary potential of floras in biodiversity hotspots. Nature 445(7129):757–760

Forest F, Crandall KA, Chase MW, Faith DP (2015) Phylogeny, extinction and conservation: embracing uncertainties in a time of urgency. Philos Trans R Soc B 370(1662). Artn 20140002. doi:10.1098/Rstb.2014.0002

Fritz SA, Purvis A (2010) Phylogenetic diversity does not capture body size variation at risk in the world's mammals. Proc R Soc B Biol Sci 277(1693):2435–2441. doi:10.1098/Rspb.2010.0030 Fritz SA, Bininda-Emonds ORP, Purvis A (2009) Geographical variation in predictors of mammalian extinction risk: big is bad, but only in the tropics. Ecol Lett 12(6):538–549.

doi:10.1111/J.1461-0248.2009.01307.X

Gaston KJ (1996) Species richness: measures and measurements. In: Gaston KJ (ed) Biodiversity: a biology of numbers and differences. Blackwell Science, Oxford, pp 77–113

Gaston KJ (2000) Global patterns in biodiversity. Nature 405:220–227

Grandcolas P, Nattier R, Legendre F, Pellens R (2010) Mapping extrinsic traits such as extinction risks or modelled bioclimatic niches on phylogenies: does it make sense at all? Cladistics 26:1–5

Gudde RM, Joy JB, Mooers AO (2013) Imperilled phylogenetic endemism of Malagasy lemuriformes. Divers Distrib 19(7):664–675. doi:10.1111/Ddi.12023

Hartmann K, André J (2013) Should evolutionary history guide conservation? Biodivers Conserv 22:449–458

Hartmann K, Steel MA (2007) Phylogenetic diversity: from combinatorics to ecology. In: Gascuel O, Steel MA (eds) Reconstructing evolution: new mathematical and computational advances. Oxford University Press, Oxford

Hennig W (1966) Phylogenetic systematics. University of Illinois Press, Urbana

Hoffmann M, Hilton-Taylor C, Angulo A et al (2010) The impact of conservation on the status of the world's vertebrates. Science 330(6010):1503–1509. doi:10.1126/Science.1194442

Huang DW, Roy K (2015) The future of evolutionary diversity in reef corals. Philos Trans R Soc B 370(1662). Artn 20140010. doi:10.1098/Rstb.2014.0010

Huang S, Stephens PR, Gittleman JL (2012) Traits, trees and taxa: global dimensions of biodiversity in mammals. Proc R Soc B Biol Sci 279(1749):4997–5003. doi:10.1098/rspb.2012.1981

Isaac NJB, Turvey ST, Collen B, Waterman C, Baillie JEM (2007) Mammals on the EDGE: conservation priorities based on threat and phylogeny. PLoS ONE 3:e296

Jono CMA, Pavoine S (2012) Threat diversity will erode mammalian phylogenetic diversity in the near future. PLoS ONE 7(9). ARTN e46235. doi:10.1371/journal.pone.0046235

Kier G, Kreft H, Lee TM et al (2009) A global assessment of endemism and species richness across island and mainland regions. Proc Natl Acad Sci U S A 106(23):9322–9327

Kremen C, Cameron A, Moilanen A et al (2008) Aligning conservation priorities across taxa in Madagascar, a biodiversity hotspot, with high-resolution planning tools. Science 320:222–226

Kukkala AS, Moilanen A (2013) Core concepts of spatial prioritisation in systematic conservation planning. Biol Rev 88(2):443–464. doi:10.1111/Brv.12008

Kuntner M, May-Collado LJ, Agnarsson I (2011) Phylogeny and conservation priorities of afrotherian mammals (Afrotheria, Mammalia). Zool Scr 40(1):1–15

Lehman SM (2006) Conservation biology of Malagasy Strepsirhines: a phylogenetic approach.

Am J Phys Anthropol 130:238–253

Lenzen M, Moran D, Kanemoto K et al (2012) International trade drives biodiversity threats in developing nations. Nature 486(7401):109–112. doi:10.1038/Nature11145

López-Osorio F, Miranda Esquivel DR (2010) A phylogenetic approach to conserving Amazonian biodiversity. Conserv Biol 24(5):1359–1366

Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71(12):8228–8235

Mace GM, Lande R (1991) Assessing extinction threats: toward a reevaluation of IUCN threatened species categories. Conserv Biol 5:148–157

Mace GM, Purvis A (2008) Evolutionary biology and practical conservation: bridging a widening gap. Mol Ecol 17(1):9–19

Mace GM, Gittleman JL, Purvis A (2003) Preserving the tree of life. Science 300:1707–1709 Mace GM, Masundire H, Baillie JEM (2005) Millennium ecosystem assessment: current states

and trends – biodiversity. Island Press, Washington, DC

Mace GM, Cramer W, Diaz S et al (2010) Biodiversity targets after 2010. Curr Opin Environ Sustain 2(1–2):3–8. doi:10.1016/J.Cosust.2010.03.003

Mace GM, Reyers B, Alkemade R et al (2014) Approaches to defining a planetary boundary for biodiversity. Global Environ Chang 28:289–297. doi:10.1016/J.Gloenvcha.2014.07.009

MacLaurin J, Sterelny K (2008) What is biodiversity? The University of Chicago Press, Chicago Magnuson-Ford K, Mooers AO, RiouxPaquette S, Steel MA (2010) Comparing strategies to pre-

serve evolutionary diversity. J Theor Biol 266:107–116

Margules CR, Pressey RL (2000) Systematic conservation planning. Nature 405:243–253 May RM (1990) Taxonomy as destiny. Nature 347:129–130

McCarthy DP, Donald PF, Scharlemann JPW et al (2012) Financial costs of meeting global biodiversity conservation targets: current spending and unmet needs. Science 338(6109):946–949. doi:10.1126/Science.1229803

McGoogan K, Kivell T, Hutchison M et al (2007) Phylogenetic diversity and the conservation biogeography of African primates. J Biogeogr 34(11):1962–1974

McKinney ML (1999) High rates of extinction and threat in poorly studied taxa. Conserv Biol 13:1273–1281

Millennium Ecosystem Assessment (2005) Ecosystems and human well-being: biodiversity synthesis. World Resources Institute, Washington, DC

Moilanen A, Kujala H, Leathwick J (2009) The zonation framework and software for conservation prioritization. In: Moilanen A, Wilson KH, Possingham HP (eds) Spatial conservation prioritization: quantitative methods and computational tools. Oxford University Press, Oxford, pp 196–210

Mooers AO, Heard SB, Chrostowski E (2005) Evolutionary heritage as a metric for conservation. In: Purvis A, Gittleman JL, Brooks T (eds) Phylogeny and conservation, vol 8, Conservation biology. Cambridge University Press, London, pp 120–138

Myers N (2003) Biodiversity hotspots revisited. Bioscience 53(10):916–917

Myers N, Mittermeier RA, Mittermeier CG et al (2000) Biodiversity hotspots for conservation priorities. Nature 403:853–858

Nee S, May RM (1997) Extinction and the loss of evolutionary history. Science 278:692–694 Nipperess DA, Matsen FA (2013) The mean and variance of phylogenetic diversity under

rarefaction. Methods Ecol Evol 4(6):566–572. doi:10.1111/2041-210x.12042

Nunes LA, Turvey ST, Rosindell J (2015) The price of conserving avian phylogenetic diversity: a global prioritization approach. Philos Trans R Soc B 370(1662). doi:10.1098/Rstb.2014.0004

O'Hara RJ (1992) Telling the tree: narrative representation and the study of evolutionary history.

Biol Phil 7:135–160

Pavoine S, Ollier S, Dufour AB (2005) Is the originality of a species measurable? Ecol Lett 8:579–586

Pereira HM, Leadley PW, Proenca V et al (2010) Scenarios for global biodiversity in the 21st century. Science 330(6010):1496–1501. doi:10.1126/Science.1196624

Pereira HM, Ferrier S, Walters M et al (2013) Essential biodiversity variables. Science 339(6117):277–278. doi:10.1126/Science.1229931

Pio DV, Broennimann O, Barraclough TG, Reeves G, Rebelo AG, Thuiller W, Guisan A, Salamin N (2011) Spatial predictions of phylogenetic diversity in conservation decision making. Conserv Biol 25(6):1229–1239. doi:10.1111/J.1523-1739.2011.01773.X

Polasky S, Csuti B, Vossler CA, Meyers SM (2002) A comparison of taxonomic distinctness versus richness as criteria for setting conservation priorities for North American birds. Biol Conserv 97:99–105

Pollock LJ, Rosauer DF, Thornhill AH et al (2015) Phylogenetic diversity meets conservation policy: small areas are key to preserving eucalypt lineages. Philos Trans R Soc B 370(1662). Unsp 20140007. doi:10.1098/Rstb.2014.0007

Posadas P, Miranda Esquivel DR, Crisci JV (2001) Using phylogenetic diversity measures to set priorities in conservation: an example from Southern South America. Conserv Biol 15(5):1325–1334

Possingham HP, Andelman S, Burgman MA et al (2002) Limits to the use of threatened species lists. Trends Ecol Evol 17:503–507

Proença V, Pereira HM (2013) Comparing extinction rates: past, present, and future. Encycl Biodivers 2:167–176

Purvis A (2008) Phylogenetic approaches to the study of extinction. Ann Rev Ecol Evol 39:301– 319. doi:10.1146/Annurev-Ecolsys-063008-102010

Purvis A, Gittleman JL, Brooks T (eds) (2005) Phylogeny and conservation, vol 39, Conservation biology 8. Cambridge University Press, Cambridge

Redding DW, Mooers AO (2006) Incorporating evolutionary measures into conservation prioritization. Conserv Biol 20(6):1670–1678

Redding DW, Mooers AO, Sekercioglu CH, Collen B (2015) Global evolutionary isolation measures can capture key local conservation species in Nearctic and Neotropical bird communities. Philos Trans R Soc B 370: 20140013

Régnier C, Fontaine B, Bouchet P (2009) Not knowing, not recording, not listing: numerous unnoticed Mollusk extinctions. Conserv Biol 23:1214–1221

Rodrigues ASL, Gaston KJ (2002) Maximising phylogenetic diversity in the selection of networks of conservation areas. Biol Conserv 105:103–111

Rodrigues AS, Brooks TM, Gaston KJ (2005) Integrating phylogenetic diversity in the selection of priority areas for conservation: does it make a difference? In: Purvis A, Gittleman JL, Brooks T (eds) Phylogeny and conservation. Cambridge University Press, Cambridge, pp 101–119

Rodrigues ASL, Grenyer R, Baillie JEM et al (2011) Complete, accurate, mammalian phylogenies aid conservation planning, but not much. Philos Trans R Soc B 366(1578):2652–2660. doi:10.1098/Rstb.2011.0104

Rosauer D, Laffan SW, Crisp MD, Donnellan SC, Cook LG (2009) Phylogenetic endemism: a new approach for identifying geographical concentrations of evolutionary history. Mol Ecol 18(19):4061–4072. doi:10.1111/J.1365-294x.2009.04311.X

Safi K, Cianciaruso MV, Loyola RD et al (2011) Understanding global patterns of mammalian functional and phylogenetic diversity. Philos Trans R Soc B 366(1577):2536–2544. doi:10.1098/Rstb.2011.0024

Sarkar SK (2005) Biodiversity and environmental philosophy: an introduction. Cambridge studies in philosophy and biology. Cambridge University Press, Cambridge

Schweiger O, Klotz S, Durka W, Kühn I (2008) A comparative test of phylogenetic diversity indices. Oecologia 257:485–495

Steel M, Mimoto A, Mooers AO (2007) Hedging our bets: the expected contribution of species to future phylogenetic diversity. Evol Bioinforma 3:237–244

Thuiller W, Lavergne S, Roquet C, Boulangeat I, Lafourcade B, Araujo MB (2011) Consequences of climate change on the tree of life in Europe. Nature 470(7335):531–534. doi:10.1038/ Nature09705

Thuiller W, Maiorano L, Mazel F et al (2015) Conserving the functional and phylogenetic trees of life of European tetrapods. Philos Trans R Soc B 370(1662). Artn 20140005. doi:10.1098/ Rstb.2014.0005

Vane-Wright RI, Humphries CJ, Williams PH (1991) What to protect? Systematics and the agony of choice. Biol Conserv 55:235–254

Walker PA, Faith DP (1994) Procedures for conservation evaluation based on phylogenetic diversity. Biodivers Lett 2(5):132–139

Weitzman ML (1998) The Noah's Ark problem. Econometrica 66(6):1279–1298. doi:10.2307/2999617

Wiley EO (1981) Phylogenetics. The theory and practice of phylogenetic systematics. Wiley-Liss, New York

Yessoufou K, Daru BH, Davies J (2012) Phylogenetic patterns of extinction risk in the eastern Arc ecosystems, an African biodiversity hotspot. PLoS ONE 7(10):e47082

Zupan L, Cabeza M, Maiorano L et al (2014) Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe. Biodivers Conserv 20(6):674–685. doi:10.1111/Ddi.12186

 
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