Albert CH, de Bello F, Boulangeat I, Pellet G, Lavorel S, Thuiller W (2012) On the importance of intraspecific variability for the quantification of functional diversity. Oikos 121(1):116–126

Bates JM, Hackett SJ, Cracraft J (1998) Area-relationships in the neotropical lowlands: an hypothesis based on raw distributions of passerine birds. J Biogeogr 25(4):783–793

Brown J, Hedtke S, Lemmon A, Lemmon E (2010) When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates. Syst Biol 59(2):145–161

Cavender-Bares J, Kozak KH, Fine PVA, Kembel SW (2009) The merging of community ecology and phylogenetic biology. Ecol Lett 12(7):693–715

Crowley P (1992) Resampling methods for computation-intensive data analysis in ecology and evolution. Annu Rev Ecol Syst 23:405–447

Crozier R (1992) Genetic diversity and the agony of choice. Biol Conserv 61(1):11–15

Da Silva JMC, Oren D (1996) Application of parsimony analysis of endemicity in amazonian biogeography: an example with primates. Biol J Linn Soc 59(4):427–437

Da Silva JMC, Rylands AB, Da Fonseca GAB (2005) The fate of the amazonian areas of endemism. Conserv Biol 19(3):689–694

Efron B (1979) Bootstrap methods: another look at the jackknife. Ann Stat 7(1):1–26

Faith D (1992) Conservation evaluation and phylogenetic diversity. Biol Conserv 61(1):1–10 Farris J, Albert V, Källersjö M, Lipscomb D, Kluge A (1996) Parsimony jackknifing outperforms

neighbor-joining. Cladistics 12(2):99–124

Goloboff PA, Carpenter JM, Arias JS, Miranda-Esquivel DR (2008) Weighting against homoplasy improves phylogenetic analysis of morphological data sets. Cladistics 24(5):758–773

Gotelli N, Graves G (1996) Null models in ecology. Smithsonian Institution Press, Washington, DC

Hedges SB (1992) The number of replications needed for accurate estimation of the bootstrap P

value in phylogenetic studies. Mol Biol Evol 9(2):366–369

Holmes S (2003) Bootstrapping phylogenetic trees: theory and methods. Stat Sci 18(2):241–255 Krajewski C (1994) Phylogenetic measures of biodiversity: a comparison and critique. Biol

Conserv 69(1):33–39

Support in Area Prioritization Using Phylogenetic Information

Lanyon S (1987) Jackknifing and bootstrapping: important “new” statistical techniques for ornithologists. Auk 104(1):144–146

Lehman SM (2006) Conservation biology of Malagasy strepsirhines: a phylogenetic approach. Am J Phys Anthropol 130(2):238–253

López-Osorio F, Miranda-Esquivel D (2010) A phylogenetic approach to conserving amazonian biodiversity. Conserv Biol 24(5):1359–1366

Miller JA (2003) Assessing progress in systematics with continuous jackknife function analysis.

Syst Biol 52(1):55–65

Pattengale N, Alipour M, Bininda-Emonds O, Moret B, Stamatakis A (2010) How many bootstrap replicates are necessary? J Comput Biol 17(3):337–354

Pérez-Losada M, Jara C, Bond-Buckup G, Crandall K (2002) Conservation phylogenetics of chilean freshwater crabs Aegla (anomura, aeglidae): assigning priorities for aquatic habitat protection. Biol Conserv 105(3):345–353

Posadas P, Miranda-Esquivel DR, Crisci J (2001) Using phylogenetic diversity measures to set priorities in conservation: an example from southern South America. Conserv Biol 15(5):1325–1334

Prado A, Hawkins J, Yesson C, Bárcenas R (2010) Multiple diversity measures to identify complementary conservation areas for the Baja California peninsular cacti. Biol Conserv 143(6):1510–1520

Purvis A, Hector A (2000) Getting the measure of biodiversity. Nature 405(6783):212–219 Quenouille M (1949) Approximate tests of correlation in time series. R Stat Soc Ser B 11:18–84 R Core Team (2013) R: A language and environment for statistical computing. R Foundation for

Statistical Computing, Vienna.

Rannala B, Zhu T, Yang Z (2012) Tail paradox, partial identifiability, and influential priors in bayesian branch length inference. Mol Biol Evol 29(1):325–335

Redding DW, Hartmann K, Mimoto A, Bokal D, DeVos M, Mooers AØ (2008) Evolutionarily distinctive species often capture more phylogenetic diversity than expected. J Theor Biol 251(4):606–615

Rolland J, Cadotte MW, Davies J, Devictor V, Lavergne S, Mouquet N, Pavoine S, Rodrigues A, Thuiller W, Turcati L, Winter M, Zupan L, Jabot F, Morlon H (2012) Using phylogenies in conservation: new perspectives. Biol Lett 8(5):692–694

Scheiner SM (2012) A metric of biodiversity that integrates abundance, phylogeny, and function.

Oikos 121(8):1191–1202

Schweiger O, Klotz S, Durka W, Kühn I (2008) A comparative test of phylogenetic diversity indices. Oecologia 157(3):485–495

Smith E, van Belle G (1984) Nonparametric estimation of species richness. Biometrics 40:119–129

Spinks P, Shaffer H (2009) Conflicting mitochondrial and nuclear phylogenies for the widely disjunct Emys (testudines: Emydidae) species complex, and what they tell us about biogeography and hybridization. Syst Biol 58(1):1–20

Vane-Wright R, Humphries C, Williams P (1991) What to protect? – systematics and the agony of choice. Biol Conserv 55(3):235–254

Vellend M, Cornwell W, Magnuson-Ford K, Mooers A (2011) Measuring phylogenetic biodiversity in Biological Diversity: Frontiers in Measurement and Assessment. eds

A.E. Magurran B.J. McGill. Oxford University Press, New York, pp 194–207, Chap. 14 Wheeler WC (1995) Sequence alignment, parameter sensitivity, and the phylogenetic analysis of

molecular data. Syst Biol 44(3):321–331

Whiting A, Lawler S, Horwitz P, Crandall K (2000) Biogeographic regionalization of Australia: assigning conservation priorities based on endemic freshwater crayfish phylogenetics. Anim Conserv 3(2):155–163

Wickham H (2009) ggplot2: elegant graphics for data analysis. Springer, New York

Winter M, Devictor V, Schweiger O (2013) Phylogenetic diversity and nature conservation: where are we? Trends Ecol Evol 28(4):199–204

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