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Home arrow Environment arrow Biodiversity Conservation and Phylogenetic Systematics

A short course of lectures
«Biodiversity Conservation and Phylogenetic Systematics»

Classic Measures and Their Phylogenetic GeneralizationsCalculations Using Phylogenetic Distinctiveness Fail to Integrate ComplementarityDiscussionEvolutionary DistinctnessJack-KnifeSimple Calculations Based on PDBiodiversity Conservation in MadagascarPriorities for Conservation of the Evolutionary History of Amphibians in the CerradoMaterial and MethodsMaterial and MethodsPhylogenetic Diversity as a General Measure of BiodiversityDiscussionPhylogenetic Hill Numbers and Related MeasuresTaxon Selection ProblemsThe Role of the Number of Phylogenies on Site ScoresData and SamplingIn Phase with Modern Systematics and NGS Methods: The Tree First, Then the SpeciesResultsIndexes UsedEmpirical ExamplesWhat Is the Meaning of Extreme Phylogenetic Diversity? The Case of Phylogenetic Relict SpeciesStudy AreaFuture PerspectivesAre Relict Species Evolutionarily Frozen?Extinction Drivers: Animals Versus PlantsPhylogenetic ExtremitiesSimulation MethodsSarcolaenaceae as a Model Group for Conservation in MadagascarDiscussionPhylogenetics and Phylogenetic DiversityHierarchical ClusteringHill Numbers and the Replication PrincipleMethods and MaterialsStudy Groups and PhylogeniesMaterial and MethodsResultsSplit Diversity: Measuring and Optimizing Biodiversity Using Phylogenetic Split NetworksMadagascarAnthropogenic VariablesThe Main CandidatesExtensionProposed ProtocolUsing Phylogenetic Dissimilarities Among Sites for Biodiversity Assessments and ConservationInstrumental ValueQuestionsBirds on Long BranchesThe Roles of Phylogenetic DiversityNormalized Phylogenetic Similarity MeasuresAssessing Hotspots of Evolutionary Distinctiveness in New CaledoniaLong Branches and Their Biological MeaningReconsidering the Loss of Evolutionary History: How Does Non-random Extinction Prune the Tree-of-Life?I QuestionsBiodiversity Optimization ProblemsResampling Multiple Phylogenies: How Stable Are the Results?A Simple Graphical Description of ED for the Single Gradient CaseHotspots of Species Richness and Phylogenetic Diversity in the NeotropicsSpecies Diversity and Species RichnessThe Importance of Phylogeny in ConservationSpeciation and Extinction as Two Natural ProcessesAssessing Hotspots of Evolutionary History with Data from Multiple Phylogenies:Phylogenetic Diversity as a Basis for Defining “Planetary Boundaries” for BiodiversityMaterial and MethodsDigital Distribution Maps of the IUCN Red List of Threatened SpeciesMethodsData Used and Pre-processingNumber of ReplicatesGreedy AlgorithmsIsland StudiesRelictness: A Relative Notion and the Need for Formal AnalysesSupport in Area Prioritization Using Phylogenetic InformationThe NeotropicsPhylogenetic Generalized EntropiesThe Measure of Split DiversityHuman Emotional Responses to the Natural WorldOne of Many BiodiversitiesNext StepsApplicationsSarcolaenaceae as a Model GroupInfluence of Individual PhylogeniesProperties of the Ferrier et al. formulaIntrinsic ValueII MethodsPhylogenetics and Conservation in New Zealand: The Long and the Short of ItQuantifying the Loss of Evolutionary HistoryPhylogenetic DataThe Influence of Species Richness on Site ScoresRelict Species and Conservation Biology: A Final AppraisalThe Rarefaction of Phylogenetic Diversity: Formulation, Extension and ApplicationComputer SoftwareAppendixGeneralized EntropiesRelict Species and Present Extinction RisksMoral Justifications for a General Measure of Biodiversity?Metapopulation CapacityWhat Then, Is a Relict Species?Is There a Geographical or a Climatic Component to the Notion of Relictness?GEO BONFormulationPhylogenetic Diversity Measures and Their Decomposition: A Framework Based on Hill NumbersPhylogenetic Split NetworksFuture DirectionsSplitsTreeResultsComputational Methods in Conservation PlanningThe PD Phylogenetic Diversity Framework: Linking Evolutionary History to Feature Diversity for Biodiversity ConservationMaximization of Complementary Richness (MCR)Complementarity: A Key PD AttributeSpecies, Mimicry and Phylogenetic DiversityExtinction and the Loss of Evolutionary HistoryIsland BiogeographyProspectsPDA: Phylogenetic Diversity AnalyzerPhylogenetics and Conservation Biology: Drawing a Path into the Diversity of LifeRelicts and Ecosystem FunctioningPhylogenetic Beta-DiversityResultsThe Value of Phylogenetic DiversityMeasures and AnalysisGlossaryMetapopulation Capacity Meets Evolutionary Distinctness: Spatial Fragmentation Complements Phylogenetic Rarity in PrioritizationPhylogenetic EvennessData AnalysisConservation of Phylogenetic Diversity in Madagascar's Largest Endemic Plant Family, SarcolaenaceaeSome Considerations About the Sites PrioritizedInteger ProgrammingMeasures of Biodiversity and Madagascar's Network of Protected AreasDiscussionMetric and Corrections for BiasImpacts on Biodiversity ConservationJack-Knife in ConservationGlobal Self-Consistent Hierarchical High-Resolution Shoreline DataSpecies DistributionOther AlgorithmsPhylogenetic Structure in Extinction RisksDecomposition of Phylogenetic Diversity MeasuresPatterns of Species, Phylogenetic and Mimicry Diversity of Clearwing ButterfliesShifting the Balance Towards a Low-Diversity EarthOn a Reptilian LimbMeasures We Rule OutAn ExampleMethodsResampling AnalysisAnalysisFunction and MorphologyHow the ED Method Converts PD-Dissimilarities to Estimates of Gains and LossesExtinction TrendsCase Study SetupPhylogenetic DispersionMimicry ClassificationStandardisation of SamplingWhat a Relict Species Is Not?Genetic DiversitySecond Case: The Support for the Original RankingReserve Selection ProblemsRepresenting Hotspots of Evolutionary History in Systematic Conservation Planning for European MammalsDiscussionApplicationSurrogates of BiodiversityResultsMethodological ConsiderationsCalculations and ComparisonsFirst Case: The Original Ranking Does Not Mean SupportOptimal ScenarioConsideration of Individual SitesA Maze of MeasuresDiscussionGlobal Spatial Analyses of Phylogenetic Conservation Priorities for Aquatic MammalsResultsPersistence Versus RepresentativenessThe Future of Phylogenetic SystematicsConservation PlanningSpatial AnalysisReplication Principle for Phylogenetic Diversity MeasuresIII ApplicationsFeature Diversity and Evolutionary Models of Character ChangeMaterial and MethodsHill Numbers and Their Phylogenetic GeneralizationsLong Branches and Phylogenetic DiversityDiscussionResultsMüllerian Mimicry: Patterns of Diversity and Community Vulnerability
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