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Home arrow Environment arrow Biodiversity Conservation and Phylogenetic Systematics

A short course of lectures
«Biodiversity Conservation and Phylogenetic Systematics»

Genetic DiversityTaxon Selection ProblemsThe Main CandidatesComplementarity: A Key PD AttributeDecomposition of Phylogenetic Diversity MeasuresCase Study SetupGreedy AlgorithmsPhylogenetic Generalized EntropiesMetapopulation Capacity Meets Evolutionary Distinctness: Spatial Fragmentation Complements Phylogenetic Rarity in PrioritizationEvolutionary DistinctnessAssessing Hotspots of Evolutionary Distinctiveness in New CaledoniaStudy Groups and PhylogeniesLong Branches and Their Biological MeaningProposed ProtocolResultsGlobal Spatial Analyses of Phylogenetic Conservation Priorities for Aquatic MammalsPhylogenetic EvennessGlobal Self-Consistent Hierarchical High-Resolution Shoreline DataIs There a Geographical or a Climatic Component to the Notion of Relictness?ExtensionMethods and MaterialsMüllerian Mimicry: Patterns of Diversity and Community VulnerabilitySpecies, Mimicry and Phylogenetic DiversityConsideration of Individual SitesRelictness: A Relative Notion and the Need for Formal AnalysesCalculations and ComparisonsCalculations Using Phylogenetic Distinctiveness Fail to Integrate ComplementarityPatterns of Species, Phylogenetic and Mimicry Diversity of Clearwing ButterfliesSpecies DistributionSimple Calculations Based on PDHow the ED Method Converts PD-Dissimilarities to Estimates of Gains and LossesQuantifying the Loss of Evolutionary HistoryThe Value of Phylogenetic DiversityHill Numbers and the Replication PrincipleBiodiversity Optimization ProblemsPhylogenetic DispersionSome Considerations About the Sites PrioritizedRepresenting Hotspots of Evolutionary History in Systematic Conservation Planning for European MammalsNext StepsOptimal ScenarioPhylogenetic ExtremitiesSpatial AnalysisFunction and MorphologyMethodological ConsiderationsApplicationApplicationsInfluence of Individual PhylogeniesMeasures of Biodiversity and Madagascar's Network of Protected AreasPhylogenetic Hill Numbers and Related MeasuresIsland BiogeographyFormulationPhylogenetic Diversity as a General Measure of BiodiversityIsland StudiesSpeciation and Extinction as Two Natural ProcessesReplication Principle for Phylogenetic Diversity MeasuresOther AlgorithmsSarcolaenaceae as a Model GroupEmpirical ExamplesThe Role of the Number of Phylogenies on Site ScoresRelicts and Ecosystem FunctioningFeature Diversity and Evolutionary Models of Character ChangeProperties of the Ferrier et al. formulaAnthropogenic VariablesMimicry ClassificationComputational Methods in Conservation PlanningRelict Species and Conservation Biology: A Final AppraisalIndexes UsedNormalized Phylogenetic Similarity MeasuresMetric and Corrections for BiasPhylogenetics and Conservation in New Zealand: The Long and the Short of ItResultsDiscussionResultsSplitsTreeSarcolaenaceae as a Model Group for Conservation in MadagascarOne of Many BiodiversitiesDiscussionPhylogenetic Diversity Measures and Their Decomposition: A Framework Based on Hill NumbersMethodsProspectsPhylogenetic DataA Maze of MeasuresWhat Then, Is a Relict Species?Relict Species and Present Extinction RisksOn a Reptilian LimbSplit Diversity: Measuring and Optimizing Biodiversity Using Phylogenetic Split NetworksThe NeotropicsThe Roles of Phylogenetic DiversityBiodiversity Conservation in MadagascarHill Numbers and Their Phylogenetic GeneralizationsResultsFuture DirectionsHuman Emotional Responses to the Natural WorldResampling AnalysisExtinction Drivers: Animals Versus PlantsMaterial and MethodsPhylogenetic Diversity as a Basis for Defining “Planetary Boundaries” for BiodiversityData AnalysisIII ApplicationsShifting the Balance Towards a Low-Diversity EarthThe Rarefaction of Phylogenetic Diversity: Formulation, Extension and ApplicationStudy AreaInteger ProgrammingMaterial and MethodsThe Future of Phylogenetic SystematicsDiscussionSurrogates of BiodiversityJack-Knife in ConservationThe Measure of Split DiversityJack-KnifeDiscussionII MethodsClassic Measures and Their Phylogenetic GeneralizationsAn ExampleNumber of ReplicatesExtinction and the Loss of Evolutionary HistoryData Used and Pre-processingSecond Case: The Support for the Original RankingSimulation MethodsPhylogenetics and Conservation Biology: Drawing a Path into the Diversity of LifeGeneralized EntropiesMadagascarQuestionsResultsDiscussionFuture PerspectivesIn Phase with Modern Systematics and NGS Methods: The Tree First, Then the SpeciesLong Branches and Phylogenetic DiversityA Simple Graphical Description of ED for the Single Gradient CaseSpecies Diversity and Species RichnessGEO BONWhat Is the Meaning of Extreme Phylogenetic Diversity? The Case of Phylogenetic Relict SpeciesDiscussionDiscussionHierarchical ClusteringPriorities for Conservation of the Evolutionary History of Amphibians in the CerradoPersistence Versus RepresentativenessThe PD Phylogenetic Diversity Framework: Linking Evolutionary History to Feature Diversity for Biodiversity ConservationInstrumental ValueHotspots of Species Richness and Phylogenetic Diversity in the NeotropicsAre Relict Species Evolutionarily Frozen?Moral Justifications for a General Measure of Biodiversity?Reserve Selection ProblemsBirds on Long BranchesIntrinsic ValueResultsMaterial and MethodsPhylogenetic Split NetworksUsing Phylogenetic Dissimilarities Among Sites for Biodiversity Assessments and ConservationThe Importance of Phylogeny in ConservationDigital Distribution Maps of the IUCN Red List of Threatened SpeciesI QuestionsPDA: Phylogenetic Diversity AnalyzerGlossaryResampling Multiple Phylogenies: How Stable Are the Results?Impacts on Biodiversity ConservationComputer SoftwareConservation PlanningConservation of Phylogenetic Diversity in Madagascar's Largest Endemic Plant Family, SarcolaenaceaePhylogenetics and Phylogenetic DiversityReconsidering the Loss of Evolutionary History: How Does Non-random Extinction Prune the Tree-of-Life?ResultsMetapopulation CapacityMaterial and MethodsExtinction TrendsWhat a Relict Species Is Not?AnalysisPhylogenetic Structure in Extinction RisksMaterial and MethodsMethodsData and SamplingMeasures We Rule OutMeasures and AnalysisSupport in Area Prioritization Using Phylogenetic InformationAppendixFirst Case: The Original Ranking Does Not Mean SupportAssessing Hotspots of Evolutionary History with Data from Multiple Phylogenies:Phylogenetic Beta-DiversityStandardisation of SamplingMaximization of Complementary Richness (MCR)The Influence of Species Richness on Site Scores
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